J5_9WW4_002

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)

Length

24 nucleotides

Bulged bases

9WW4|1|AA|C|2289, 9WW4|1|AA|U|2350

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9WW4_002 not in the Motif Atlas

Homologous match to J5_8GLP_002

Geometric discrepancy: 0.0281

The information below is about J5_8GLP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08384.4

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

9WW4|1|AA|G|1335
9WW4|1|AA|G|1336
9WW4|1|AA|A|1337
9WW4|1|AA|G|1338
9WW4|1|AA|U|1339
9WW4|1|AA|OMC|1340
*
9WW4|1|AA|G|1516
9WW4|1|AA|G|1517
9WW4|1|AA|A|1518
9WW4|1|AA|C|1519
*
9WW4|1|AA|G|1658
9WW4|1|AA|U|1659
9WW4|1|AA|U|1660
9WW4|1|AA|C|1661
*
9WW4|1|AA|G|2288
9WW4|1|AA|C|2289
9WW4|1|AA|C|2290
*
9WW4|1|AA|G|2345
9WW4|1|AA|C|2346
9WW4|1|AA|A|2347
9WW4|1|AA|G|2348
9WW4|1|AA|A|2349
9WW4|1|AA|U|2350
9WW4|1|AA|OMC|2351

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

Large ribosomal subunit protein uL4

Chain AN

60S ribosomal protein L13

Chain AP

60S ribosomal protein L15

Chain Ac

Large ribosomal subunit protein uL15

Chain Ag

60S ribosomal protein L32

Chain As

60S ribosomal protein L28