J5_9WW4_003

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9WW4|1|AA|G|3620, 9WW4|1|AA|G|3625

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9WW4_003 not in the Motif Atlas

Homologous match to J5_8GLP_003

Geometric discrepancy: 0.0359

The information below is about J5_8GLP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.4

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

12

Unit IDs

9WW4|1|AA|G|2855
9WW4|1|AA|C|2856
9WW4|1|AA|A|2857
9WW4|1|AA|A|2858
9WW4|1|AA|G|2859
9WW4|1|AA|C|2860
9WW4|1|AA|OMC|2861
9WW4|1|AA|G|2862
9WW4|1|AA|G|2863
*
9WW4|1|AA|U|2887
9WW4|1|AA|G|2888
*
9WW4|1|AA|U|3613
9WW4|1|AA|G|3614
*
9WW4|1|AA|C|3618
9WW4|1|AA|G|3619
9WW4|1|AA|G|3620
9WW4|1|AA|A|3621
9WW4|1|AA|C|3622
9WW4|1|AA|C|3623
9WW4|1|AA|A|3624
9WW4|1|AA|G|3625
9WW4|1|AA|G|3626
*
9WW4|1|AA|C|3835
9WW4|1|AA|A|3836
9WW4|1|AA|C|3837

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AE

Large ribosomal subunit protein uL3

Chain AT

60S ribosomal protein L19

Chain AX

60S ribosomal protein L23

Chain AY

60S ribosomal protein L24

Chain BA

Small subunit ribosomal RNA; SSU rRNA