J5_9WW4_004
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9WW4|1|AA|A|3908, 9WW4|1|AA|A|4394, 9WW4|1|AA|G|4451, 9WW4|1|AA|U|4555, 9WW4|1|AA|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW4|1|AA|A|3903
9WW4|1|AA|G|3904
9WW4|1|AA|A|3905
9WW4|1|AA|A|3906
9WW4|1|AA|G|3907
9WW4|1|AA|A|3908
9WW4|1|AA|C|3909
9WW4|1|AA|C|3910
*
9WW4|1|AA|OMG|4392
9WW4|1|AA|G|4393
9WW4|1|AA|A|4394
9WW4|1|AA|U|4395
9WW4|1|AA|A|4396
9WW4|1|AA|A|4397
9WW4|1|AA|C|4398
9WW4|1|AA|U|4399
9WW4|1|AA|G|4400
*
9WW4|1|AA|C|4444
9WW4|1|AA|U|4445
9WW4|1|AA|U|4446
9WW4|1|AA|5MC|4447
9WW4|1|AA|G|4448
9WW4|1|AA|A|4449
9WW4|1|AA|U|4450
9WW4|1|AA|G|4451
9WW4|1|AA|U|4452
9WW4|1|AA|C|4453
*
9WW4|1|AA|G|4528
9WW4|1|AA|G|4529
9WW4|1|AA|UR3|4530
9WW4|1|AA|U|4531
9WW4|1|AA|PSU|4532
9WW4|1|AA|A|4533
9WW4|1|AA|G|4534
*
9WW4|1|AA|PSU|4552
9WW4|1|AA|A|4553
9WW4|1|AA|G|4554
9WW4|1|AA|U|4555
9WW4|1|AA|U|4556
9WW4|1|AA|U|4557
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AD
- 60S ribosomal protein L8
- Chain AE
- Large ribosomal subunit protein uL3
- Chain AF
- Large ribosomal subunit protein uL4
- Chain Ad
- 60S ribosomal protein L29
Coloring options: