J5_9WW4_005
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9WW4|1|AA|G|3922, 9WW4|1|AA|A|4376, 9WW4|1|AA|G|4377, 9WW4|1|AA|A|4378, 9WW4|1|AA|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9WW4_005 not in the Motif Atlas
- Homologous match to J5_9H3G_006
- Geometric discrepancy: 0.0474
- The information below is about J5_9H3G_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.4
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 8
Unit IDs
9WW4|1|AA|PSU|3920
9WW4|1|AA|U|3921
9WW4|1|AA|G|3922
9WW4|1|AA|A|3923
*
9WW4|1|AA|U|4188
9WW4|1|AA|U|4189
9WW4|1|AA|U|4190
9WW4|1|AA|G|4191
*
9WW4|1|AA|C|4204
9WW4|1|AA|A|4205
*
9WW4|1|AA|OMU|4227
9WW4|1|AA|OMG|4228
*
9WW4|1|AA|C|4375
9WW4|1|AA|A|4376
9WW4|1|AA|G|4377
9WW4|1|AA|A|4378
9WW4|1|AA|A|4379
9WW4|1|AA|A|4380
9WW4|1|AA|A|4381
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AD
- 60S ribosomal protein L8
- Chain AP
- 60S ribosomal protein L15
- Chain AS
- 60S ribosomal protein L18
- Chain AV
- 60S ribosomal protein L21
- Chain Ac
- Large ribosomal subunit protein uL15
- Chain Ad
- 60S ribosomal protein L29
- Chain Aq
- 60S ribosomal protein L36a
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