J5_9WW4_009

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9WW4|1|BA|G|126, 9WW4|1|BA|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW4|1|BA|G|123
9WW4|1|BA|U|124
9WW4|1|BA|C|125
9WW4|1|BA|G|126
9WW4|1|BA|C|127
9WW4|1|BA|U|128
9WW4|1|BA|C|129
*
9WW4|1|BA|G|183
9WW4|1|BA|G|184
9WW4|1|BA|G|185
*
9WW4|1|BA|U|214
9WW4|1|BA|G|215
*
9WW4|1|BA|C|310
9WW4|1|BA|C|311
9WW4|1|BA|G|312
*
9WW4|1|BA|C|337
9WW4|1|BA|G|338
9WW4|1|BA|A|339
9WW4|1|BA|C|340
9WW4|1|BA|C|341

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BB

40S ribosomal protein S4, X isoform

Chain BH

40S ribosomal protein S8

Chain BW

40S ribosomal protein S6