J5_9WW6_002
3D structure
- PDB id
- 9WW6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome delta eL41 non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 9WW6|1|AA|C|2289, 9WW6|1|AA|U|2350
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9WW6|1|AA|G|1335
9WW6|1|AA|G|1336
9WW6|1|AA|A|1337
9WW6|1|AA|G|1338
9WW6|1|AA|U|1339
9WW6|1|AA|OMC|1340
*
9WW6|1|AA|G|1516
9WW6|1|AA|G|1517
9WW6|1|AA|A|1518
9WW6|1|AA|C|1519
*
9WW6|1|AA|G|1658
9WW6|1|AA|U|1659
9WW6|1|AA|U|1660
9WW6|1|AA|C|1661
*
9WW6|1|AA|G|2288
9WW6|1|AA|C|2289
9WW6|1|AA|C|2290
*
9WW6|1|AA|G|2345
9WW6|1|AA|C|2346
9WW6|1|AA|A|2347
9WW6|1|AA|G|2348
9WW6|1|AA|A|2349
9WW6|1|AA|U|2350
9WW6|1|AA|OMC|2351
Current chains
- Chain AA
- 28S rRNA (3773-MER)
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- Large ribosomal subunit protein uL4
- Chain AN
- 60S ribosomal protein L13
- Chain AP
- 60S ribosomal protein L15
- Chain Ac
- Large ribosomal subunit protein uL15
- Chain Ag
- 60S ribosomal protein L32
- Chain As
- 60S ribosomal protein L28
Coloring options: