J5_9WW6_004

3D structure

PDB id

9WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome delta eL41 non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU

Length

40 nucleotides

Bulged bases

9WW6|1|AA|A|3908, 9WW6|1|AA|A|4394, 9WW6|1|AA|U|4450, 9WW6|1|AA|G|4451, 9WW6|1|AA|U|4555, 9WW6|1|AA|U|4556

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW6|1|AA|A|3903
9WW6|1|AA|G|3904
9WW6|1|AA|A|3905
9WW6|1|AA|A|3906
9WW6|1|AA|G|3907
9WW6|1|AA|A|3908
9WW6|1|AA|C|3909
9WW6|1|AA|C|3910
*
9WW6|1|AA|OMG|4392
9WW6|1|AA|G|4393
9WW6|1|AA|A|4394
9WW6|1|AA|U|4395
9WW6|1|AA|A|4396
9WW6|1|AA|A|4397
9WW6|1|AA|C|4398
9WW6|1|AA|U|4399
9WW6|1|AA|G|4400
*
9WW6|1|AA|C|4444
9WW6|1|AA|U|4445
9WW6|1|AA|U|4446
9WW6|1|AA|5MC|4447
9WW6|1|AA|G|4448
9WW6|1|AA|A|4449
9WW6|1|AA|U|4450
9WW6|1|AA|G|4451
9WW6|1|AA|U|4452
9WW6|1|AA|C|4453
*
9WW6|1|AA|G|4528
9WW6|1|AA|G|4529
9WW6|1|AA|UR3|4530
9WW6|1|AA|U|4531
9WW6|1|AA|PSU|4532
9WW6|1|AA|A|4533
9WW6|1|AA|G|4534
*
9WW6|1|AA|PSU|4552
9WW6|1|AA|A|4553
9WW6|1|AA|G|4554
9WW6|1|AA|U|4555
9WW6|1|AA|U|4556
9WW6|1|AA|U|4557

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain AE

Large ribosomal subunit protein uL3

Chain AF

Large ribosomal subunit protein uL4

Chain Ad

60S ribosomal protein L29