J5_9WW6_006

3D structure

PDB id

9WW6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome delta eL41 non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUUG(PSU)C(PSU)*AAAAAUAACAAUACAG*CCUGUAAUUGGAAUGAGUCCA*UUAACGAGG(A2M)UCCAU*AUA(OMG)

Length

63 nucleotides

Bulged bases

9WW6|1|BA|U|556, 9WW6|1|BA|G|588, 9WW6|1|BA|C|593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW6|1|BA|C|30
9WW6|1|BA|U|31
9WW6|1|BA|U|32
9WW6|1|BA|G|33
9WW6|1|BA|PSU|34
9WW6|1|BA|C|35
9WW6|1|BA|PSU|36
*
9WW6|1|BA|A|519
9WW6|1|BA|A|520
9WW6|1|BA|A|521
9WW6|1|BA|A|522
9WW6|1|BA|A|523
9WW6|1|BA|U|524
9WW6|1|BA|A|525
9WW6|1|BA|A|526
9WW6|1|BA|C|527
9WW6|1|BA|A|528
9WW6|1|BA|A|529
9WW6|1|BA|U|530
9WW6|1|BA|A|531
9WW6|1|BA|C|532
9WW6|1|BA|A|533
9WW6|1|BA|G|534
*
9WW6|1|BA|C|549
9WW6|1|BA|C|550
9WW6|1|BA|U|551
9WW6|1|BA|G|552
9WW6|1|BA|U|553
9WW6|1|BA|A|554
9WW6|1|BA|A|555
9WW6|1|BA|U|556
9WW6|1|BA|U|557
9WW6|1|BA|G|558
9WW6|1|BA|G|559
9WW6|1|BA|A|560
9WW6|1|BA|A|561
9WW6|1|BA|U|562
9WW6|1|BA|G|563
9WW6|1|BA|A|564
9WW6|1|BA|G|565
9WW6|1|BA|U|566
9WW6|1|BA|C|567
9WW6|1|BA|C|568
9WW6|1|BA|A|569
*
9WW6|1|BA|U|581
9WW6|1|BA|U|582
9WW6|1|BA|A|583
9WW6|1|BA|A|584
9WW6|1|BA|C|585
9WW6|1|BA|G|586
9WW6|1|BA|A|587
9WW6|1|BA|G|588
9WW6|1|BA|G|589
9WW6|1|BA|A2M|590
9WW6|1|BA|U|591
9WW6|1|BA|C|592
9WW6|1|BA|C|593
9WW6|1|BA|A|594
9WW6|1|BA|U|595
*
9WW6|1|BA|A|641
9WW6|1|BA|U|642
9WW6|1|BA|A|643
9WW6|1|BA|OMG|644

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BQ

40S ribosomal protein S23

Chain BX

40S ribosomal protein S9

Chain Bc

40S ribosomal protein S24

Chain Bf

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein