J5_9XFK_001

3D structure

PDB id

9XFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of bacterial 50S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9XFK|1|I|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XFK|1|I|C|47
9XFK|1|I|G|48
9XFK|1|I|A|49
9XFK|1|I|U|50
9XFK|1|I|G|51
9XFK|1|I|A|52
9XFK|1|I|A|53
9XFK|1|I|G|54
*
9XFK|1|I|C|116
9XFK|1|I|G|117
9XFK|1|I|A|118
9XFK|1|I|A|119
9XFK|1|I|U|120
9XFK|1|I|G|121
*
9XFK|1|I|C|130
9XFK|1|I|A|131
*
9XFK|1|I|U|148
9XFK|1|I|A|149
9XFK|1|I|U|150
*
9XFK|1|I|A|176
9XFK|1|I|G|177
9XFK|1|I|G|178

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34