J5_9XFL_005
3D structure
- PDB id
- 9XFL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In vitro structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9XFL|1|I|A|2062, 9XFL|1|I|A|2448, 9XFL|1|I|U|2585, 9XFL|1|I|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9XFL|1|I|G|2057
9XFL|1|I|A|2058
9XFL|1|I|A|2059
9XFL|1|I|A|2060
9XFL|1|I|G|2061
9XFL|1|I|A|2062
9XFL|1|I|C|2063
9XFL|1|I|C|2064
*
9XFL|1|I|G|2446
9XFL|1|I|G|2447
9XFL|1|I|A|2448
9XFL|1|I|H2U|2449
9XFL|1|I|A|2450
9XFL|1|I|A|2451
9XFL|1|I|C|2452
9XFL|1|I|A|2453
*
9XFL|1|I|U|2500
9XFL|1|I|C|2501
9XFL|1|I|G|2502
9XFL|1|I|2MA|2503
9XFL|1|I|PSU|2504
9XFL|1|I|G|2505
9XFL|1|I|U|2506
9XFL|1|I|C|2507
*
9XFL|1|I|G|2582
9XFL|1|I|G|2583
9XFL|1|I|U|2584
9XFL|1|I|U|2585
9XFL|1|I|U|2586
9XFL|1|I|A|2587
9XFL|1|I|G|2588
*
9XFL|1|I|C|2606
9XFL|1|I|G|2607
9XFL|1|I|G|2608
9XFL|1|I|U|2609
9XFL|1|I|C|2610
9XFL|1|I|C|2611
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL2
- Chain L
- Large ribosomal subunit protein uL3
- Chain M
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L15
- Chain U
- Large ribosomal subunit protein uL16
- Chain a
- 50S ribosomal protein L22
- Chain i
- Large ribosomal subunit protein bL32
Coloring options: