J5_9XWO_008
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9XWO|1|a|A|2448, 9XWO|1|a|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9XWO|1|a|G|2057
9XWO|1|a|A|2058
9XWO|1|a|A|2059
9XWO|1|a|A|2060
9XWO|1|a|G|2061
9XWO|1|a|A|2062
9XWO|1|a|C|2063
9XWO|1|a|C|2064
*
9XWO|1|a|G|2446
9XWO|1|a|G|2447
9XWO|1|a|A|2448
9XWO|1|a|H2U|2449
9XWO|1|a|A|2450
9XWO|1|a|A|2451
9XWO|1|a|C|2452
9XWO|1|a|A|2453
*
9XWO|1|a|U|2500
9XWO|1|a|C|2501
9XWO|1|a|G|2502
9XWO|1|a|2MA|2503
9XWO|1|a|PSU|2504
9XWO|1|a|G|2505
9XWO|1|a|U|2506
9XWO|1|a|C|2507
*
9XWO|1|a|G|2582
9XWO|1|a|G|2583
9XWO|1|a|U|2584
9XWO|1|a|U|2585
9XWO|1|a|U|2586
9XWO|1|a|A|2587
9XWO|1|a|G|2588
*
9XWO|1|a|C|2606
9XWO|1|a|G|2607
9XWO|1|a|G|2608
9XWO|1|a|U|2609
9XWO|1|a|C|2610
9XWO|1|a|C|2611
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 6
- Secretion monitor
- Chain Y
- Transfer RNA; tRNA
- Chain Z
- Transfer RNA; tRNA
- Chain c
- Large ribosomal subunit protein uL2
- Chain d
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L16
- Chain r
- 50S ribosomal protein L22
- Chain v
- Large ribosomal subunit protein bL27
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: