J5_9Y49_006

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

9Y49|1|B2|A|590, 9Y49|1|B2|C|592, 9Y49|1|B2|C|593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|B2|C|30
9Y49|1|B2|U|31
9Y49|1|B2|U|32
9Y49|1|B2|G|33
9Y49|1|B2|U|34
*
9Y49|1|B2|A|521
9Y49|1|B2|A|522
9Y49|1|B2|A|523
9Y49|1|B2|U|524
9Y49|1|B2|A|525
9Y49|1|B2|A|526
9Y49|1|B2|C|527
*
9Y49|1|B2|G|558
9Y49|1|B2|G|559
9Y49|1|B2|A|560
9Y49|1|B2|A|561
9Y49|1|B2|U|562
9Y49|1|B2|G|563
9Y49|1|B2|A|564
9Y49|1|B2|G|565
*
9Y49|1|B2|C|585
9Y49|1|B2|G|586
9Y49|1|B2|A|587
9Y49|1|B2|G|588
9Y49|1|B2|G|589
9Y49|1|B2|A|590
9Y49|1|B2|U|591
9Y49|1|B2|C|592
9Y49|1|B2|C|593
9Y49|1|B2|A|594
9Y49|1|B2|U|595
*
9Y49|1|B2|A|641
9Y49|1|B2|U|642
9Y49|1|B2|A|643
9Y49|1|B2|G|644

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AJ

40S ribosomal protein S9

Chain AX

40S ribosomal protein S23

Chain Ae

40S ribosomal protein S30