J5_9Y49_008

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCCACUU*AUGCCGACGGG*UG*CCG*CGACC

Length

43 nucleotides

Bulged bases

9Y49|1|B2|C|125, 9Y49|1|B2|U|128, 9Y49|1|B2|C|129, 9Y49|1|B2|G|130, 9Y49|1|B2|C|131, 9Y49|1|B2|U|132, 9Y49|1|B2|C|133, 9Y49|1|B2|C|134, 9Y49|1|B2|U|135, 9Y49|1|B2|C|136, 9Y49|1|B2|U|137, 9Y49|1|B2|C|138, 9Y49|1|B2|C|139, 9Y49|1|B2|C|140, 9Y49|1|B2|C|142

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|B2|G|123
9Y49|1|B2|U|124
9Y49|1|B2|C|125
9Y49|1|B2|G|126
9Y49|1|B2|C|127
9Y49|1|B2|U|128
9Y49|1|B2|C|129
9Y49|1|B2|G|130
9Y49|1|B2|C|131
9Y49|1|B2|U|132
9Y49|1|B2|C|133
9Y49|1|B2|C|134
9Y49|1|B2|U|135
9Y49|1|B2|C|136
9Y49|1|B2|U|137
9Y49|1|B2|C|138
9Y49|1|B2|C|139
9Y49|1|B2|C|140
9Y49|1|B2|A|141
9Y49|1|B2|C|142
9Y49|1|B2|U|143
9Y49|1|B2|U|144
*
9Y49|1|B2|A|175
9Y49|1|B2|U|176
9Y49|1|B2|G|177
9Y49|1|B2|C|178
9Y49|1|B2|C|179
9Y49|1|B2|G|180
9Y49|1|B2|A|181
9Y49|1|B2|C|182
9Y49|1|B2|G|183
9Y49|1|B2|G|184
9Y49|1|B2|G|185
*
9Y49|1|B2|U|214
9Y49|1|B2|G|215
*
9Y49|1|B2|C|310
9Y49|1|B2|C|311
9Y49|1|B2|G|312
*
9Y49|1|B2|C|337
9Y49|1|B2|G|338
9Y49|1|B2|A|339
9Y49|1|B2|C|340
9Y49|1|B2|C|341

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8