J5_9YDC_007

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

9YDC|1|E|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDC|1|E|C|31
9YDC|1|E|U|32
9YDC|1|E|U|33
9YDC|1|E|G|34
9YDC|1|E|U|35
*
9YDC|1|E|A|473
9YDC|1|E|A|474
9YDC|1|E|A|475
9YDC|1|E|U|476
9YDC|1|E|A|477
9YDC|1|E|A|478
9YDC|1|E|C|479
*
9YDC|1|E|G|509
9YDC|1|E|G|510
9YDC|1|E|A|511
9YDC|1|E|A|512
9YDC|1|E|U|513
9YDC|1|E|G|514
*
9YDC|1|E|C|543
9YDC|1|E|A|544
9YDC|1|E|A|545
9YDC|1|E|U|546
*
9YDC|1|E|A|592
9YDC|1|E|U|593
9YDC|1|E|A|594
9YDC|1|E|G|595

Current chains

Chain E

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sc

40S ribosomal protein S23-A

Chain Sg

40S ribosomal protein S30-A