J5_9YDC_008
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9YDC|1|E|A|93, 9YDC|1|E|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDC|1|E|C|54
9YDC|1|E|A|55
9YDC|1|E|U|56
9YDC|1|E|G|57
*
9YDC|1|E|C|90
9YDC|1|E|G|91
9YDC|1|E|A|92
9YDC|1|E|A|93
9YDC|1|E|U|94
9YDC|1|E|G|95
9YDC|1|E|G|96
9YDC|1|E|C|97
*
9YDC|1|E|G|386
9YDC|1|E|A|387
9YDC|1|E|G|388
*
9YDC|1|E|C|409
9YDC|1|E|A|410
9YDC|1|E|C|411
*
9YDC|1|E|G|422
9YDC|1|E|G|423
9YDC|1|E|C|424
9YDC|1|E|A|425
9YDC|1|E|G|426
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain LX
- 60S ribosomal protein L23-A
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sd
- 40S ribosomal protein S24-A
Coloring options: