J5_9YDD_003
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 9YDD|1|A|U|719, 9YDD|1|A|A|784, 9YDD|1|A|G|785
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9YDD_003 not in the Motif Atlas
- Homologous match to J5_9PN5_003
- Geometric discrepancy: 0.0786
- The information below is about J5_9PN5_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.2
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9YDD|1|A|C|675
9YDD|1|A|G|676
9YDD|1|A|A|677
9YDD|1|A|G|678
*
9YDD|1|A|C|702
9YDD|1|A|G|703
9YDD|1|A|U|704
9YDD|1|A|A|705
9YDD|1|A|A|706
*
9YDD|1|A|U|713
9YDD|1|A|G|714
9YDD|1|A|A|715
9YDD|1|A|A|716
9YDD|1|A|C|717
9YDD|1|A|G|718
9YDD|1|A|U|719
9YDD|1|A|A|720
9YDD|1|A|G|721
*
9YDD|1|A|C|749
9YDD|1|A|G|750
9YDD|1|A|A|751
*
9YDD|1|A|U|782
9YDD|1|A|A|783
9YDD|1|A|A|784
9YDD|1|A|G|785
9YDD|1|A|A|786
9YDD|1|A|G|787
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LS
- 60S ribosomal protein L18-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ld
- 60S ribosomal protein L29
- Chain Lk
- 60S ribosomal protein L36-A
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