J5_9YDD_005
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9YDD|1|A|A|2404, 9YDD|1|A|A|2817, 9YDD|1|A|U|2818, 9YDD|1|A|G|2874, 9YDD|1|A|U|2978, 9YDD|1|A|U|2979
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDD|1|A|A|2399
9YDD|1|A|G|2400
9YDD|1|A|A|2401
9YDD|1|A|A|2402
9YDD|1|A|G|2403
9YDD|1|A|A|2404
9YDD|1|A|C|2405
9YDD|1|A|C|2406
*
9YDD|1|A|G|2815
9YDD|1|A|G|2816
9YDD|1|A|A|2817
9YDD|1|A|U|2818
9YDD|1|A|A|2819
9YDD|1|A|A|2820
9YDD|1|A|C|2821
9YDD|1|A|U|2822
9YDD|1|A|G|2823
*
9YDD|1|A|C|2867
9YDD|1|A|U|2868
9YDD|1|A|U|2869
9YDD|1|A|C|2870
9YDD|1|A|G|2871
9YDD|1|A|A|2872
9YDD|1|A|U|2873
9YDD|1|A|G|2874
9YDD|1|A|U|2875
9YDD|1|A|C|2876
*
9YDD|1|A|G|2951
9YDD|1|A|G|2952
9YDD|1|A|U|2953
9YDD|1|A|U|2954
9YDD|1|A|U|2955
9YDD|1|A|A|2956
9YDD|1|A|G|2957
*
9YDD|1|A|U|2975
9YDD|1|A|A|2976
9YDD|1|A|G|2977
9YDD|1|A|U|2978
9YDD|1|A|U|2979
9YDD|1|A|U|2980
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LE
- 60S ribosomal protein L3
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ld
- 60S ribosomal protein L29
- Chain m
- Transfer RNA; tRNA
Coloring options: