J5_9YPO_004
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9YPO|1|5|G|3620, 9YPO|1|5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPO|1|5|G|2855
9YPO|1|5|C|2856
9YPO|1|5|A|2857
9YPO|1|5|A|2858
9YPO|1|5|G|2859
9YPO|1|5|C|2860
9YPO|1|5|C|2861
9YPO|1|5|G|2862
9YPO|1|5|G|2863
*
9YPO|1|5|U|2887
9YPO|1|5|G|2888
*
9YPO|1|5|U|3613
9YPO|1|5|G|3614
*
9YPO|1|5|C|3618
9YPO|1|5|G|3619
9YPO|1|5|G|3620
9YPO|1|5|A|3621
9YPO|1|5|C|3622
9YPO|1|5|C|3623
9YPO|1|5|A|3624
9YPO|1|5|G|3625
9YPO|1|5|G|3626
*
9YPO|1|5|C|3835
9YPO|1|5|A|3836
9YPO|1|5|C|3837
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- Ribosomal protein L3
- Chain R
- Ribosomal protein L19
- Chain V
- Ribosomal protein L23
- Chain W
- eL24
Coloring options: