J5_9YPO_005
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9YPO|1|5|A|3908, 9YPO|1|5|A|4394, 9YPO|1|5|G|4451, 9YPO|1|5|U|4452, 9YPO|1|5|U|4555, 9YPO|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPO|1|5|A|3903
9YPO|1|5|G|3904
9YPO|1|5|A|3905
9YPO|1|5|A|3906
9YPO|1|5|G|3907
9YPO|1|5|A|3908
9YPO|1|5|C|3909
9YPO|1|5|C|3910
*
9YPO|1|5|G|4392
9YPO|1|5|G|4393
9YPO|1|5|A|4394
9YPO|1|5|U|4395
9YPO|1|5|A|4396
9YPO|1|5|A|4397
9YPO|1|5|C|4398
9YPO|1|5|U|4399
9YPO|1|5|G|4400
*
9YPO|1|5|C|4444
9YPO|1|5|U|4445
9YPO|1|5|U|4446
9YPO|1|5|C|4447
9YPO|1|5|G|4448
9YPO|1|5|A|4449
9YPO|1|5|U|4450
9YPO|1|5|G|4451
9YPO|1|5|U|4452
9YPO|1|5|C|4453
*
9YPO|1|5|G|4528
9YPO|1|5|G|4529
9YPO|1|5|U|4530
9YPO|1|5|U|4531
9YPO|1|5|U|4532
9YPO|1|5|A|4533
9YPO|1|5|G|4534
*
9YPO|1|5|U|4552
9YPO|1|5|A|4553
9YPO|1|5|G|4554
9YPO|1|5|U|4555
9YPO|1|5|U|4556
9YPO|1|5|U|4557
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 13
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein L8
- Chain B
- Ribosomal protein L3
- Chain C
- 60S ribosomal protein L4
- Chain a
- 60S ribosomal protein L27a
- Chain b
- Large ribosomal subunit protein eL29
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