J5_9YPO_008

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|C|30
9YPO|1|9|U|31
9YPO|1|9|U|32
9YPO|1|9|G|33
9YPO|1|9|U|34
*
9YPO|1|9|A|521
9YPO|1|9|A|522
9YPO|1|9|A|523
9YPO|1|9|U|524
9YPO|1|9|A|525
9YPO|1|9|A|526
9YPO|1|9|C|527
*
9YPO|1|9|G|558
9YPO|1|9|G|559
9YPO|1|9|A|560
9YPO|1|9|A|561
9YPO|1|9|U|562
9YPO|1|9|G|563
9YPO|1|9|A|564
9YPO|1|9|G|565
*
9YPO|1|9|C|585
9YPO|1|9|G|586
9YPO|1|9|A|587
9YPO|1|9|G|588
9YPO|1|9|G|589
9YPO|1|9|A|590
9YPO|1|9|U|591
9YPO|1|9|C|592
9YPO|1|9|C|593
9YPO|1|9|A|594
9YPO|1|9|U|595
*
9YPO|1|9|A|641
9YPO|1|9|U|642
9YPO|1|9|A|643
9YPO|1|9|G|644

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

uS12

Chain ee

40S ribosomal protein S30