J5_9YPO_010

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9YPO|1|9|G|126, 9YPO|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|G|123
9YPO|1|9|U|124
9YPO|1|9|C|125
9YPO|1|9|G|126
9YPO|1|9|C|127
9YPO|1|9|U|128
9YPO|1|9|C|129
*
9YPO|1|9|G|183
9YPO|1|9|G|184
9YPO|1|9|G|185
*
9YPO|1|9|U|214
9YPO|1|9|G|215
*
9YPO|1|9|C|310
9YPO|1|9|C|311
9YPO|1|9|G|312
*
9YPO|1|9|C|337
9YPO|1|9|G|338
9YPO|1|9|A|339
9YPO|1|9|C|340
9YPO|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8