J5_9YPS_009
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9YPS|1|9|U|55, 9YPS|1|9|A|92, 9YPS|1|9|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPS|1|9|C|53
9YPS|1|9|A|54
9YPS|1|9|U|55
9YPS|1|9|G|56
*
9YPS|1|9|C|89
9YPS|1|9|G|90
9YPS|1|9|A|91
9YPS|1|9|A|92
9YPS|1|9|U|93
9YPS|1|9|G|94
9YPS|1|9|G|95
9YPS|1|9|C|96
*
9YPS|1|9|G|434
9YPS|1|9|A|435
9YPS|1|9|G|436
*
9YPS|1|9|C|457
9YPS|1|9|A|458
9YPS|1|9|C|459
*
9YPS|1|9|G|470
9YPS|1|9|G|471
9YPS|1|9|C|472
9YPS|1|9|A|473
9YPS|1|9|G|474
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain EE
- eS4 (S4 X isoform)
- Chain GG
- 40S ribosomal protein S6
- Chain II
- 40S ribosomal protein S8
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain V
- Ribosomal protein L23
- Chain YY
- 40S ribosomal protein S24
Coloring options: