J5_9YPT_004
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9YPT|1|5|G|3620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9YPT_004 not in the Motif Atlas
- Homologous match to J5_8GLP_003
- Geometric discrepancy: 0.0475
- The information below is about J5_8GLP_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.4
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YPT|1|5|G|2855
9YPT|1|5|C|2856
9YPT|1|5|A|2857
9YPT|1|5|A|2858
9YPT|1|5|G|2859
9YPT|1|5|C|2860
9YPT|1|5|C|2861
9YPT|1|5|G|2862
9YPT|1|5|G|2863
*
9YPT|1|5|U|2887
9YPT|1|5|G|2888
*
9YPT|1|5|U|3613
9YPT|1|5|G|3614
*
9YPT|1|5|C|3618
9YPT|1|5|G|3619
9YPT|1|5|G|3620
9YPT|1|5|A|3621
9YPT|1|5|C|3622
9YPT|1|5|C|3623
9YPT|1|5|A|3624
9YPT|1|5|G|3625
9YPT|1|5|G|3626
*
9YPT|1|5|C|3835
9YPT|1|5|A|3836
9YPT|1|5|C|3837
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- Ribosomal protein L3
- Chain R
- Ribosomal protein L19
- Chain V
- Ribosomal protein L23
- Chain W
- eL24
Coloring options: