J5_9YPT_010

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9YPT|1|9|G|126, 9YPT|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|9|G|123
9YPT|1|9|U|124
9YPT|1|9|C|125
9YPT|1|9|G|126
9YPT|1|9|C|127
9YPT|1|9|U|128
9YPT|1|9|C|129
*
9YPT|1|9|G|183
9YPT|1|9|G|184
9YPT|1|9|G|185
*
9YPT|1|9|U|214
9YPT|1|9|G|215
*
9YPT|1|9|C|310
9YPT|1|9|C|311
9YPT|1|9|G|312
*
9YPT|1|9|C|337
9YPT|1|9|G|338
9YPT|1|9|A|339
9YPT|1|9|C|340
9YPT|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8