J5_9YPV_010

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9YPV|1|9|G|126, 9YPV|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|9|G|123
9YPV|1|9|U|124
9YPV|1|9|C|125
9YPV|1|9|G|126
9YPV|1|9|C|127
9YPV|1|9|U|128
9YPV|1|9|C|129
*
9YPV|1|9|G|183
9YPV|1|9|G|184
9YPV|1|9|G|185
*
9YPV|1|9|U|214
9YPV|1|9|G|215
*
9YPV|1|9|C|310
9YPV|1|9|C|311
9YPV|1|9|G|312
*
9YPV|1|9|C|337
9YPV|1|9|G|338
9YPV|1|9|A|339
9YPV|1|9|C|340
9YPV|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8