Loop J5_9YPW

3D structure

PDB id: 9YPW (explore in PDB, NAKB, or RNA 3D Hub)
Description: GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: CC*GAGGGAG*UGCGCCGCGCUCUCC*GCCGG*CCACGCGUCCCCCGCGAGCGCACGGGG
Length: 56 nucleotides
Bulged bases: 9YPW|1|5|G|959, 9YPW|1|5|C|972, 9YPW|1|5|C|1237, 9YPW|1|5|C|1248, 9YPW|1|5|C|1249, 9YPW|1|5|G|1271, 9YPW|1|5|C|1272, 9YPW|1|5|C|1280
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9YPW|1|5|C|712
9YPW|1|5|C|713
*
9YPW|1|5|G|955
9YPW|1|5|A|956
9YPW|1|5|G|957
9YPW|1|5|G|958
9YPW|1|5|G|959
9YPW|1|5|A|960
9YPW|1|5|G|961
*
9YPW|1|5|U|971
9YPW|1|5|G|971|||A
9YPW|1|5|C|972
9YPW|1|5|G|973
9YPW|1|5|C|974
9YPW|1|5|C|975
9YPW|1|5|G|976
9YPW|1|5|C|977
9YPW|1|5|G|978
9YPW|1|5|C|979
9YPW|1|5|U|980
9YPW|1|5|C|981
9YPW|1|5|U|982
9YPW|1|5|C|983
9YPW|1|5|C|984
*
9YPW|1|5|G|1070
9YPW|1|5|C|1071
9YPW|1|5|C|1072
9YPW|1|5|G|1073
9YPW|1|5|G|1074
*
9YPW|1|5|C|1236
9YPW|1|5|C|1237
9YPW|1|5|A|1238
9YPW|1|5|C|1239
9YPW|1|5|G|1244
9YPW|1|5|C|1245
9YPW|1|5|G|1246
9YPW|1|5|U|1247
9YPW|1|5|C|1248
9YPW|1|5|C|1249
9YPW|1|5|C|1250
9YPW|1|5|C|1251
9YPW|1|5|C|1252
9YPW|1|5|G|1271
9YPW|1|5|C|1272
9YPW|1|5|G|1273
9YPW|1|5|A|1274
9YPW|1|5|G|1275
9YPW|1|5|C|1276
9YPW|1|5|G|1277
9YPW|1|5|C|1278
9YPW|1|5|A|1279
9YPW|1|5|C|1280
9YPW|1|5|G|1281
9YPW|1|5|G|1282
9YPW|1|5|G|1283
9YPW|1|5|G|1284

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain C: 60S ribosomal protein L4
Chain E: 60S ribosomal protein L6
Chain K: 60S ribosomal protein L7
Chain b: Large ribosomal subunit protein eL29
Chain e: Ribosomal protein L32

J5_9YPW_002