J5_9YPY_004
3D structure
- PDB id
- 9YPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome with accommodated A-site tRNA, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9YPY|1|5|A|3908, 9YPY|1|5|A|4394, 9YPY|1|5|G|4451, 9YPY|1|5|U|4452, 9YPY|1|5|U|4555, 9YPY|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPY|1|5|A|3903
9YPY|1|5|G|3904
9YPY|1|5|A|3905
9YPY|1|5|A|3906
9YPY|1|5|G|3907
9YPY|1|5|A|3908
9YPY|1|5|C|3909
9YPY|1|5|C|3910
*
9YPY|1|5|G|4392
9YPY|1|5|G|4393
9YPY|1|5|A|4394
9YPY|1|5|U|4395
9YPY|1|5|A|4396
9YPY|1|5|A|4397
9YPY|1|5|C|4398
9YPY|1|5|U|4399
9YPY|1|5|G|4400
*
9YPY|1|5|C|4444
9YPY|1|5|U|4445
9YPY|1|5|U|4446
9YPY|1|5|C|4447
9YPY|1|5|G|4448
9YPY|1|5|A|4449
9YPY|1|5|U|4450
9YPY|1|5|G|4451
9YPY|1|5|U|4452
9YPY|1|5|C|4453
*
9YPY|1|5|G|4528
9YPY|1|5|G|4529
9YPY|1|5|U|4530
9YPY|1|5|U|4531
9YPY|1|5|U|4532
9YPY|1|5|A|4533
9YPY|1|5|G|4534
*
9YPY|1|5|U|4552
9YPY|1|5|A|4553
9YPY|1|5|G|4554
9YPY|1|5|U|4555
9YPY|1|5|U|4556
9YPY|1|5|U|4557
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 12
- Transfer RNA; tRNA
- Chain 13
- Transfer RNA; tRNA
- Chain A
- Ribosomal protein L8
- Chain B
- Ribosomal protein L3
- Chain C
- 60S ribosomal protein L4
- Chain a
- 60S ribosomal protein L27a
- Chain b
- Large ribosomal subunit protein eL29
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