J5_9YPY_009

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9YPY|1|9|G|126, 9YPY|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|9|G|123
9YPY|1|9|U|124
9YPY|1|9|C|125
9YPY|1|9|G|126
9YPY|1|9|C|127
9YPY|1|9|U|128
9YPY|1|9|C|129
*
9YPY|1|9|G|183
9YPY|1|9|G|184
9YPY|1|9|G|185
*
9YPY|1|9|U|214
9YPY|1|9|G|215
*
9YPY|1|9|C|310
9YPY|1|9|C|311
9YPY|1|9|G|312
*
9YPY|1|9|C|337
9YPY|1|9|G|338
9YPY|1|9|A|339
9YPY|1|9|C|340
9YPY|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8