Loop J5_9YPZ

3D structure

PDB id: 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Vacant ribosome with P-site tRNA, substate 1, Structure Ia
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: CC*GAGGGAG*UGCGCCGCGCUCUCC*GCCGG*CCACGCGUCCCCCGCGAGCGCACGGGG
Length: 56 nucleotides
Bulged bases: 9YPZ|1|5|G|959, 9YPZ|1|5|C|972, 9YPZ|1|5|C|1237, 9YPZ|1|5|G|1271, 9YPZ|1|5|C|1272, 9YPZ|1|5|C|1280
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9YPZ|1|5|C|712
9YPZ|1|5|C|713
*
9YPZ|1|5|G|955
9YPZ|1|5|A|956
9YPZ|1|5|G|957
9YPZ|1|5|G|958
9YPZ|1|5|G|959
9YPZ|1|5|A|960
9YPZ|1|5|G|961
*
9YPZ|1|5|U|971
9YPZ|1|5|G|971|||A
9YPZ|1|5|C|972
9YPZ|1|5|G|973
9YPZ|1|5|C|974
9YPZ|1|5|C|975
9YPZ|1|5|G|976
9YPZ|1|5|C|977
9YPZ|1|5|G|978
9YPZ|1|5|C|979
9YPZ|1|5|U|980
9YPZ|1|5|C|981
9YPZ|1|5|U|982
9YPZ|1|5|C|983
9YPZ|1|5|C|984
*
9YPZ|1|5|G|1070
9YPZ|1|5|C|1071
9YPZ|1|5|C|1072
9YPZ|1|5|G|1073
9YPZ|1|5|G|1074
*
9YPZ|1|5|C|1236
9YPZ|1|5|C|1237
9YPZ|1|5|A|1238
9YPZ|1|5|C|1239
9YPZ|1|5|G|1244
9YPZ|1|5|C|1245
9YPZ|1|5|G|1246
9YPZ|1|5|U|1247
9YPZ|1|5|C|1248
9YPZ|1|5|C|1249
9YPZ|1|5|C|1250
9YPZ|1|5|C|1251
9YPZ|1|5|C|1252
9YPZ|1|5|G|1271
9YPZ|1|5|C|1272
9YPZ|1|5|G|1273
9YPZ|1|5|A|1274
9YPZ|1|5|G|1275
9YPZ|1|5|C|1276
9YPZ|1|5|G|1277
9YPZ|1|5|C|1278
9YPZ|1|5|A|1279
9YPZ|1|5|C|1280
9YPZ|1|5|G|1281
9YPZ|1|5|G|1282
9YPZ|1|5|G|1283
9YPZ|1|5|G|1284

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain C: 60S ribosomal protein L4
Chain E: 60S ribosomal protein L6
Chain K: 60S ribosomal protein L7
Chain b: Large ribosomal subunit protein eL29
Chain e: Ribosomal protein L32

J5_9YPZ_002