J5_9YPZ_008
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPZ|1|9|C|30
9YPZ|1|9|U|31
9YPZ|1|9|U|32
9YPZ|1|9|G|33
9YPZ|1|9|U|34
*
9YPZ|1|9|A|521
9YPZ|1|9|A|522
9YPZ|1|9|A|523
9YPZ|1|9|U|524
9YPZ|1|9|A|525
9YPZ|1|9|A|526
9YPZ|1|9|C|527
*
9YPZ|1|9|G|558
9YPZ|1|9|G|559
9YPZ|1|9|A|560
9YPZ|1|9|A|561
9YPZ|1|9|U|562
9YPZ|1|9|G|563
9YPZ|1|9|A|564
9YPZ|1|9|G|565
*
9YPZ|1|9|C|585
9YPZ|1|9|G|586
9YPZ|1|9|A|587
9YPZ|1|9|G|588
9YPZ|1|9|G|589
9YPZ|1|9|A|590
9YPZ|1|9|U|591
9YPZ|1|9|C|592
9YPZ|1|9|C|593
9YPZ|1|9|A|594
9YPZ|1|9|U|595
*
9YPZ|1|9|A|641
9YPZ|1|9|U|642
9YPZ|1|9|A|643
9YPZ|1|9|G|644
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain XX
- uS12
- Chain ee
- 40S ribosomal protein S30
Coloring options: