J5_9YPZ_010

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9YPZ|1|9|G|126, 9YPZ|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|9|G|123
9YPZ|1|9|U|124
9YPZ|1|9|C|125
9YPZ|1|9|G|126
9YPZ|1|9|C|127
9YPZ|1|9|U|128
9YPZ|1|9|C|129
*
9YPZ|1|9|G|183
9YPZ|1|9|G|184
9YPZ|1|9|G|185
*
9YPZ|1|9|U|214
9YPZ|1|9|G|215
*
9YPZ|1|9|C|310
9YPZ|1|9|C|311
9YPZ|1|9|G|312
*
9YPZ|1|9|C|337
9YPZ|1|9|G|338
9YPZ|1|9|A|339
9YPZ|1|9|C|340
9YPZ|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8