J5_9YQ0_002
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CC*GAGGGAG*UGCGCCGCGCUCUCC*GCCGG*CCACGCGUCCCCCGCGAGCGCACGGGG
- Length
- 56 nucleotides
- Bulged bases
- 9YQ0|1|5|G|959, 9YQ0|1|5|C|972, 9YQ0|1|5|C|1237, 9YQ0|1|5|C|1252, 9YQ0|1|5|G|1271, 9YQ0|1|5|C|1272, 9YQ0|1|5|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YQ0|1|5|C|712
9YQ0|1|5|C|713
*
9YQ0|1|5|G|955
9YQ0|1|5|A|956
9YQ0|1|5|G|957
9YQ0|1|5|G|958
9YQ0|1|5|G|959
9YQ0|1|5|A|960
9YQ0|1|5|G|961
*
9YQ0|1|5|U|971
9YQ0|1|5|G|971|||A
9YQ0|1|5|C|972
9YQ0|1|5|G|973
9YQ0|1|5|C|974
9YQ0|1|5|C|975
9YQ0|1|5|G|976
9YQ0|1|5|C|977
9YQ0|1|5|G|978
9YQ0|1|5|C|979
9YQ0|1|5|U|980
9YQ0|1|5|C|981
9YQ0|1|5|U|982
9YQ0|1|5|C|983
9YQ0|1|5|C|984
*
9YQ0|1|5|G|1070
9YQ0|1|5|C|1071
9YQ0|1|5|C|1072
9YQ0|1|5|G|1073
9YQ0|1|5|G|1074
*
9YQ0|1|5|C|1236
9YQ0|1|5|C|1237
9YQ0|1|5|A|1238
9YQ0|1|5|C|1239
9YQ0|1|5|G|1244
9YQ0|1|5|C|1245
9YQ0|1|5|G|1246
9YQ0|1|5|U|1247
9YQ0|1|5|C|1248
9YQ0|1|5|C|1249
9YQ0|1|5|C|1250
9YQ0|1|5|C|1251
9YQ0|1|5|C|1252
9YQ0|1|5|G|1271
9YQ0|1|5|C|1272
9YQ0|1|5|G|1273
9YQ0|1|5|A|1274
9YQ0|1|5|G|1275
9YQ0|1|5|C|1276
9YQ0|1|5|G|1277
9YQ0|1|5|C|1278
9YQ0|1|5|A|1279
9YQ0|1|5|C|1280
9YQ0|1|5|G|1281
9YQ0|1|5|G|1282
9YQ0|1|5|G|1283
9YQ0|1|5|G|1284
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain K
- 60S ribosomal protein L7
- Chain b
- Large ribosomal subunit protein eL29
- Chain e
- Ribosomal protein L32
Coloring options: