J5_9YQ1_010

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9YQ1|1|9|G|126, 9YQ1|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|9|G|123
9YQ1|1|9|U|124
9YQ1|1|9|C|125
9YQ1|1|9|G|126
9YQ1|1|9|C|127
9YQ1|1|9|U|128
9YQ1|1|9|C|129
*
9YQ1|1|9|G|183
9YQ1|1|9|G|184
9YQ1|1|9|G|185
*
9YQ1|1|9|U|214
9YQ1|1|9|G|215
*
9YQ1|1|9|C|310
9YQ1|1|9|C|311
9YQ1|1|9|G|312
*
9YQ1|1|9|C|337
9YQ1|1|9|G|338
9YQ1|1|9|A|339
9YQ1|1|9|C|340
9YQ1|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8