J5_9ZN2_005

3D structure

PDB id

9ZN2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome initiation complex bound to IF1 and extended IF2-GDPCP (70S IC*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

9ZN2|1|A|A|2448, 9ZN2|1|A|U|2585, 9ZN2|1|A|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ZN2|1|A|G|2057
9ZN2|1|A|A|2058
9ZN2|1|A|A|2059
9ZN2|1|A|A|2060
9ZN2|1|A|G|2061
9ZN2|1|A|A|2062
9ZN2|1|A|C|2063
9ZN2|1|A|C|2064
*
9ZN2|1|A|G|2446
9ZN2|1|A|G|2447
9ZN2|1|A|A|2448
9ZN2|1|A|H2U|2449
9ZN2|1|A|A|2450
9ZN2|1|A|A|2451
9ZN2|1|A|C|2452
9ZN2|1|A|A|2453
*
9ZN2|1|A|U|2500
9ZN2|1|A|C|2501
9ZN2|1|A|G|2502
9ZN2|1|A|2MA|2503
9ZN2|1|A|PSU|2504
9ZN2|1|A|G|2505
9ZN2|1|A|U|2506
9ZN2|1|A|C|2507
*
9ZN2|1|A|G|2582
9ZN2|1|A|G|2583
9ZN2|1|A|U|2584
9ZN2|1|A|U|2585
9ZN2|1|A|U|2586
9ZN2|1|A|A|2587
9ZN2|1|A|G|2588
*
9ZN2|1|A|C|2606
9ZN2|1|A|G|2607
9ZN2|1|A|G|2608
9ZN2|1|A|U|2609
9ZN2|1|A|C|2610
9ZN2|1|A|C|2611

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

Large ribosomal subunit protein uL4

Chain N

50S ribosomal protein L15

Chain U

50S ribosomal protein L22