J6_10PX_003

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

10PX|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

10PX|1|2A|G|44
10PX|1|2A|C|45
*
10PX|1|2A|G|179
10PX|1|2A|G|180
10PX|1|2A|A|181
10PX|1|2A|A|182
10PX|1|2A|C|183
*
10PX|1|2A|G|214
10PX|1|2A|G|215
10PX|1|2A|A|216
10PX|1|2A|G|217
10PX|1|2A|A|218
10PX|1|2A|G|219
10PX|1|2A|G|220
10PX|1|2A|A|221
10PX|1|2A|A|222
10PX|1|2A|A|223
10PX|1|2A|G|224
*
10PX|1|2A|C|231
10PX|1|2A|G|232
10PX|1|2A|A|233
10PX|1|2A|C|234
10PX|1|2A|U|235
*
10PX|1|2A|A|262
10PX|1|2A|C|263
10PX|1|2A|C|264
10PX|1|2A|A|265
10PX|1|2A|G|266
*
10PX|1|2A|C|426
10PX|1|2A|U|427
10PX|1|2A|A|428
10PX|1|2A|A|429
10PX|1|2A|G|430
10PX|1|2A|U|431
10PX|1|2A|A|432
10PX|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34