J6_11DG_001

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

11DG|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|a|G|45
11DG|1|a|G|46
*
11DG|1|a|C|179
11DG|1|a|G|180
11DG|1|a|A|181
11DG|1|a|A|182
11DG|1|a|C|183
*
11DG|1|a|G|214
11DG|1|a|G|215
11DG|1|a|A|216
11DG|1|a|A|217
11DG|1|a|A|218
11DG|1|a|A|219
11DG|1|a|G|220
11DG|1|a|A|221
11DG|1|a|A|222
11DG|1|a|A|223
11DG|1|a|U|224
*
11DG|1|a|A|231
11DG|1|a|G|232
11DG|1|a|A|233
11DG|1|a|U|234
11DG|1|a|U|235
*
11DG|1|a|A|262
11DG|1|a|G|263
11DG|1|a|C|264
11DG|1|a|A|265
11DG|1|a|G|266
*
11DG|1|a|C|426
11DG|1|a|U|427
11DG|1|a|A|428
11DG|1|a|A|429
11DG|1|a|A|430
11DG|1|a|U|431
11DG|1|a|A|432
11DG|1|a|C|433

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34