J6_11HE_002

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

11HE|1|28|G|1502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J6_11HE_002 not in the Motif Atlas

Homologous match to J6_8GLP_002

Geometric discrepancy: 0.2932

The information below is about J6_8GLP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HE|1|28|C|1352
11HE|1|28|G|1353
11HE|1|28|A|1354
11HE|1|28|G|1355
*
11HE|1|28|C|1384
11HE|1|28|G|1385
11HE|1|28|C|1386
11HE|1|28|A|1387
11HE|1|28|A|1388
*
11HE|1|28|U|1395
11HE|1|28|G|1396
11HE|1|28|A|1397
11HE|1|28|A|1398
11HE|1|28|G|1399
*
11HE|1|28|C|1418
11HE|1|28|G|1419
11HE|1|28|A|1420
11HE|1|28|G|1421
*
11HE|1|28|C|1464
11HE|1|28|G|1465
11HE|1|28|G|1466
*
11HE|1|28|C|1499
11HE|1|28|A|1500
11HE|1|28|C|1501
11HE|1|28|G|1502
11HE|1|28|A|1503
11HE|1|28|G|1504

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein eL13

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain 36

60S ribosomal protein L36

Chain L4

60S ribosomal protein L4

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a