J6_11KH_004
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 11KH|1|28|C|1501, 11KH|1|28|G|1502
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J6_11KH_004 not in the Motif Atlas
- Homologous match to J6_8GLP_002
- Geometric discrepancy: 0.3017
- The information below is about J6_8GLP_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11KH|1|28|C|1352
11KH|1|28|G|1353
11KH|1|28|A|1354
11KH|1|28|G|1355
*
11KH|1|28|C|1384
11KH|1|28|G|1385
11KH|1|28|C|1386
11KH|1|28|A|1387
11KH|1|28|A|1388
*
11KH|1|28|U|1395
11KH|1|28|G|1396
11KH|1|28|A|1397
11KH|1|28|A|1398
11KH|1|28|G|1399
*
11KH|1|28|C|1418
11KH|1|28|G|1419
11KH|1|28|A|1420
11KH|1|28|G|1421
*
11KH|1|28|C|1464
11KH|1|28|G|1465
11KH|1|28|G|1466
*
11KH|1|28|C|1499
11KH|1|28|A|1500
11KH|1|28|C|1501
11KH|1|28|G|1502
11KH|1|28|A|1503
11KH|1|28|G|1504
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 29
- Large ribosomal subunit protein eL29
- Chain 36
- 60S ribosomal protein L36
- Chain L4
- 60S ribosomal protein L4
- Chain Q
- Large ribosomal subunit protein eL18
- Chain dd
- 60S ribosomal protein L27a
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