J6_12DP_003

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

12DP|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DP|1|2A|G|44
12DP|1|2A|C|45
*
12DP|1|2A|G|179
12DP|1|2A|G|180
12DP|1|2A|A|181
12DP|1|2A|A|182
12DP|1|2A|C|183
*
12DP|1|2A|G|214
12DP|1|2A|G|215
12DP|1|2A|A|216
12DP|1|2A|G|217
12DP|1|2A|A|218
12DP|1|2A|G|219
12DP|1|2A|G|220
12DP|1|2A|A|221
12DP|1|2A|A|222
12DP|1|2A|A|223
12DP|1|2A|G|224
*
12DP|1|2A|C|231
12DP|1|2A|G|232
12DP|1|2A|A|233
12DP|1|2A|C|234
12DP|1|2A|U|235
*
12DP|1|2A|A|262
12DP|1|2A|C|263
12DP|1|2A|C|264
12DP|1|2A|A|265
12DP|1|2A|G|266
*
12DP|1|2A|C|426
12DP|1|2A|U|427
12DP|1|2A|A|428
12DP|1|2A|A|429
12DP|1|2A|G|430
12DP|1|2A|U|431
12DP|1|2A|A|432
12DP|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34