Loop J6_12DQ

3D structure

PDB id: 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.75 Å

Loop

Sequence: UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 12DQ|1|1A|U|2076, 12DQ|1|1A|A|2388, 12DQ|1|1A|U|2390, 12DQ|1|1A|G|2428, 12DQ|1|1A|A|2430, 12DQ|1|1A|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

12DQ|1|1A|U|2074
12DQ|1|1A|U|2075
12DQ|1|1A|U|2076
12DQ|1|1A|A|2077
*
12DQ|1|1A|U|2243
12DQ|1|1A|U|2244
12DQ|1|1A|U|2245
12DQ|1|1A|G|2246
*
12DQ|1|1A|C|2258
12DQ|1|1A|G|2259
*
12DQ|1|1A|C|2281
12DQ|1|1A|G|2282
12DQ|1|1A|C|2283
12DQ|1|1A|C|2284
*
12DQ|1|1A|G|2384
12DQ|1|1A|C|2385
12DQ|1|1A|C|2386
12DQ|1|1A|U|2387
12DQ|1|1A|A|2388
12DQ|1|1A|G|2389
12DQ|1|1A|U|2390
12DQ|1|1A|G|2391
12DQ|1|1A|A|2392
12DQ|1|1A|A|2393
12DQ|1|1A|C|2394
12DQ|1|1A|C|2395
*
12DQ|1|1A|G|2421
12DQ|1|1A|A|2422
12DQ|1|1A|U|2423
12DQ|1|1A|C|2424
12DQ|1|1A|A|2425
12DQ|1|1A|A|2426
12DQ|1|1A|C|2427
12DQ|1|1A|G|2428
12DQ|1|1A|G|2429
12DQ|1|1A|A|2430
12DQ|1|1A|U|2431
12DQ|1|1A|A|2432
12DQ|1|1A|A|2433
12DQ|1|1A|A|2434
12DQ|1|1A|A|2435

Current chains

Chain 1A: 23S Ribosomal RNA

Nearby chains

Chain 10: 50S ribosomal protein L27
Chain 11: 50S ribosomal protein L28
Chain 16: 50S ribosomal protein L33
Chain 18: 50S ribosomal protein L35
Chain 1D: 50S ribosomal protein L2
Chain 1P: 50S ribosomal protein L15
Chain 1Z: 50S ribosomal protein L25

J6_12DQ_002