J6_12DQ_003

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

12DQ|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DQ|1|2A|G|44
12DQ|1|2A|C|45
*
12DQ|1|2A|G|179
12DQ|1|2A|G|180
12DQ|1|2A|A|181
12DQ|1|2A|A|182
12DQ|1|2A|C|183
*
12DQ|1|2A|G|214
12DQ|1|2A|G|215
12DQ|1|2A|A|216
12DQ|1|2A|G|217
12DQ|1|2A|A|218
12DQ|1|2A|G|219
12DQ|1|2A|G|220
12DQ|1|2A|A|221
12DQ|1|2A|A|222
12DQ|1|2A|A|223
12DQ|1|2A|G|224
*
12DQ|1|2A|C|231
12DQ|1|2A|G|232
12DQ|1|2A|A|233
12DQ|1|2A|C|234
12DQ|1|2A|U|235
*
12DQ|1|2A|A|262
12DQ|1|2A|C|263
12DQ|1|2A|C|264
12DQ|1|2A|A|265
12DQ|1|2A|G|266
*
12DQ|1|2A|C|426
12DQ|1|2A|U|427
12DQ|1|2A|A|428
12DQ|1|2A|A|429
12DQ|1|2A|G|430
12DQ|1|2A|U|431
12DQ|1|2A|A|432
12DQ|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34