J6_1FFK_001

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC

Length

36 nucleotides

Bulged bases

1FFK|1|0|A|193, 1FFK|1|0|C|438

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1FFK|1|0|G|41
1FFK|1|0|C|42
*
1FFK|1|0|G|149
1FFK|1|0|G|150
1FFK|1|0|A|151
1FFK|1|0|A|152
1FFK|1|0|C|153
*
1FFK|1|0|G|184
1FFK|1|0|G|185
1FFK|1|0|A|186
1FFK|1|0|A|187
1FFK|1|0|C|188
1FFK|1|0|A|189
1FFK|1|0|G|190
1FFK|1|0|A|191
1FFK|1|0|A|192
1FFK|1|0|A|193
1FFK|1|0|A|194
*
1FFK|1|0|U|202
1FFK|1|0|G|203
1FFK|1|0|A|204
1FFK|1|0|U|205
1FFK|1|0|G|206
*
1FFK|1|0|U|233
1FFK|1|0|A|234
1FFK|1|0|C|235
1FFK|1|0|A|236
1FFK|1|0|G|237
*
1FFK|1|0|C|433
1FFK|1|0|U|434
1FFK|1|0|A|435
1FFK|1|0|A|436
1FFK|1|0|A|437
1FFK|1|0|C|438
1FFK|1|0|A|439
1FFK|1|0|C|440

Current chains

Chain 0

23S RRNA

Nearby chains

Chain I

RIBOSOMAL PROTEIN L15E

Chain X

RIBOSOMAL PROTEIN L37E