J6_1JJ2_002

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA

Length

38 nucleotides

Bulged bases

1JJ2|1|0|U|2117, 1JJ2|1|0|A|2425, 1JJ2|1|0|A|2465, 1JJ2|1|0|A|2467, 1JJ2|1|0|A|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JJ2|1|0|U|2115
1JJ2|1|0|U|2116
1JJ2|1|0|U|2117
1JJ2|1|0|A|2118
*
1JJ2|1|0|U|2276
1JJ2|1|0|U|2277
1JJ2|1|0|U|2278
1JJ2|1|0|G|2279
*
1JJ2|1|0|C|2292
1JJ2|1|0|G|2293
*
1JJ2|1|0|C|2315
1JJ2|1|0|G|2316
1JJ2|1|0|C|2317
1JJ2|1|0|C|2318
*
1JJ2|1|0|G|2421
1JJ2|1|0|U|2422
1JJ2|1|0|C|2423
1JJ2|1|0|U|2424
1JJ2|1|0|A|2425
1JJ2|1|0|G|2426
1JJ2|1|0|C|2427
1JJ2|1|0|G|2428
1JJ2|1|0|A|2429
1JJ2|1|0|A|2430
1JJ2|1|0|C|2431
1JJ2|1|0|C|2432
*
1JJ2|1|0|G|2459
1JJ2|1|0|A|2460
1JJ2|1|0|U|2461
1JJ2|1|0|G|2462
1JJ2|1|0|A|2463
1JJ2|1|0|C|2464
1JJ2|1|0|A|2465
1JJ2|1|0|G|2466
1JJ2|1|0|A|2467
1JJ2|1|0|A|2468
1JJ2|1|0|A|2469
1JJ2|1|0|A|2470

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain A

RIBOSOMAL PROTEIN L2

Chain K

RIBOSOMAL PROTEIN L15

Chain L

RIBOSOMAL PROTEIN L15E

Chain P

RIBOSOMAL PROTEIN L21E