J6_1JZX_003

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUA*UUUGA*UCG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

43 nucleotides

Bulged bases

1JZX|1|A|U|2059, 1JZX|1|A|G|2407, 1JZX|1|A|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JZX|1|A|U|2057
1JZX|1|A|U|2058
1JZX|1|A|U|2059
1JZX|1|A|A|2060
*
1JZX|1|A|U|2222
1JZX|1|A|U|2223
1JZX|1|A|U|2224
1JZX|1|A|G|2225
1JZX|1|A|A|2226
*
1JZX|1|A|U|2236
1JZX|1|A|C|2237
1JZX|1|A|G|2238
*
1JZX|1|A|C|2260
1JZX|1|A|G|2261
1JZX|1|A|C|2262
1JZX|1|A|C|2263
*
1JZX|1|A|G|2363
1JZX|1|A|C|2364
1JZX|1|A|U|2365
1JZX|1|A|U|2366
1JZX|1|A|A|2367
1JZX|1|A|G|2368
1JZX|1|A|U|2369
1JZX|1|A|G|2370
1JZX|1|A|A|2371
1JZX|1|A|A|2372
1JZX|1|A|C|2373
1JZX|1|A|C|2374
*
1JZX|1|A|G|2400
1JZX|1|A|A|2401
1JZX|1|A|U|2402
1JZX|1|A|C|2403
1JZX|1|A|A|2404
1JZX|1|A|A|2405
1JZX|1|A|C|2406
1JZX|1|A|G|2407
1JZX|1|A|G|2408
1JZX|1|A|A|2409
1JZX|1|A|U|2410
1JZX|1|A|A|2411
1JZX|1|A|A|2412
1JZX|1|A|A|2413
1JZX|1|A|A|2414

Current chains

Chain A

23S rRNA

Nearby chains