J6_1JZZ_002

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUUA*UUUGAC*GUCG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

45 nucleotides

Bulged bases

1JZZ|1|A|U|2059, 1JZZ|1|A|G|2407, 1JZZ|1|A|A|2409

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1JZZ|1|A|U|2057
1JZZ|1|A|U|2058
1JZZ|1|A|U|2059
1JZZ|1|A|A|2060
*
1JZZ|1|A|U|2222
1JZZ|1|A|U|2223
1JZZ|1|A|U|2224
1JZZ|1|A|G|2225
1JZZ|1|A|A|2226
1JZZ|1|A|C|2227
*
1JZZ|1|A|G|2235
1JZZ|1|A|U|2236
1JZZ|1|A|C|2237
1JZZ|1|A|G|2238
*
1JZZ|1|A|C|2260
1JZZ|1|A|G|2261
1JZZ|1|A|C|2262
1JZZ|1|A|C|2263
*
1JZZ|1|A|G|2363
1JZZ|1|A|C|2364
1JZZ|1|A|U|2365
1JZZ|1|A|U|2366
1JZZ|1|A|A|2367
1JZZ|1|A|G|2368
1JZZ|1|A|U|2369
1JZZ|1|A|G|2370
1JZZ|1|A|A|2371
1JZZ|1|A|A|2372
1JZZ|1|A|C|2373
1JZZ|1|A|C|2374
*
1JZZ|1|A|G|2400
1JZZ|1|A|A|2401
1JZZ|1|A|U|2402
1JZZ|1|A|C|2403
1JZZ|1|A|A|2404
1JZZ|1|A|A|2405
1JZZ|1|A|C|2406
1JZZ|1|A|G|2407
1JZZ|1|A|G|2408
1JZZ|1|A|A|2409
1JZZ|1|A|U|2410
1JZZ|1|A|A|2411
1JZZ|1|A|A|2412
1JZZ|1|A|A|2413
1JZZ|1|A|A|2414

Current chains

Chain A

23S rRNA

Nearby chains