J6_1K01_001

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAGAAGAAAG*CGAUU*AUCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

1K01|1|A|A|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|G|44
1K01|1|A|C|45
*
1K01|1|A|G|156
1K01|1|A|G|157
1K01|1|A|A|158
1K01|1|A|A|159
1K01|1|A|C|160
*
1K01|1|A|G|191
1K01|1|A|G|192
1K01|1|A|A|193
1K01|1|A|G|194
1K01|1|A|A|195
1K01|1|A|A|196
1K01|1|A|G|197
1K01|1|A|A|198
1K01|1|A|A|199
1K01|1|A|A|200
1K01|1|A|G|201
*
1K01|1|A|C|208
1K01|1|A|G|209
1K01|1|A|A|210
1K01|1|A|U|211
1K01|1|A|U|212
*
1K01|1|A|A|239
1K01|1|A|U|240
1K01|1|A|C|241
1K01|1|A|A|242
1K01|1|A|G|243
*
1K01|1|A|C|439
1K01|1|A|U|440
1K01|1|A|A|441
1K01|1|A|A|442
1K01|1|A|A|443
1K01|1|A|U|444
1K01|1|A|A|445
1K01|1|A|C|446

Current chains

Chain A

23S rRNA

Nearby chains