J6_1K01_003

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUUA*UUUGA*UCG*CGCC*GCUUAGUGAACC*GAUCAACGGAUAAAA

Length

43 nucleotides

Bulged bases

1K01|1|A|U|2059, 1K01|1|A|G|2407, 1K01|1|A|A|2409, 1K01|1|A|A|2413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1K01|1|A|U|2057
1K01|1|A|U|2058
1K01|1|A|U|2059
1K01|1|A|A|2060
*
1K01|1|A|U|2222
1K01|1|A|U|2223
1K01|1|A|U|2224
1K01|1|A|G|2225
1K01|1|A|A|2226
*
1K01|1|A|U|2236
1K01|1|A|C|2237
1K01|1|A|G|2238
*
1K01|1|A|C|2260
1K01|1|A|G|2261
1K01|1|A|C|2262
1K01|1|A|C|2263
*
1K01|1|A|G|2363
1K01|1|A|C|2364
1K01|1|A|U|2365
1K01|1|A|U|2366
1K01|1|A|A|2367
1K01|1|A|G|2368
1K01|1|A|U|2369
1K01|1|A|G|2370
1K01|1|A|A|2371
1K01|1|A|A|2372
1K01|1|A|C|2373
1K01|1|A|C|2374
*
1K01|1|A|G|2400
1K01|1|A|A|2401
1K01|1|A|U|2402
1K01|1|A|C|2403
1K01|1|A|A|2404
1K01|1|A|A|2405
1K01|1|A|C|2406
1K01|1|A|G|2407
1K01|1|A|G|2408
1K01|1|A|A|2409
1K01|1|A|U|2410
1K01|1|A|A|2411
1K01|1|A|A|2412
1K01|1|A|A|2413
1K01|1|A|A|2414

Current chains

Chain A

23S rRNA

Nearby chains