3D structure

PDB id
1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.01 Å

Loop

Sequence
GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC
Length
36 nucleotides
Bulged bases
1KC8|1|A|A|193, 1KC8|1|A|C|438
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1KC8|1|A|G|41
1KC8|1|A|C|42
*
1KC8|1|A|G|149
1KC8|1|A|G|150
1KC8|1|A|A|151
1KC8|1|A|A|152
1KC8|1|A|C|153
*
1KC8|1|A|G|184
1KC8|1|A|G|185
1KC8|1|A|A|186
1KC8|1|A|A|187
1KC8|1|A|C|188
1KC8|1|A|A|189
1KC8|1|A|G|190
1KC8|1|A|A|191
1KC8|1|A|A|192
1KC8|1|A|A|193
1KC8|1|A|A|194
*
1KC8|1|A|U|202
1KC8|1|A|G|203
1KC8|1|A|A|204
1KC8|1|A|U|205
1KC8|1|A|G|206
*
1KC8|1|A|U|233
1KC8|1|A|A|234
1KC8|1|A|C|235
1KC8|1|A|A|236
1KC8|1|A|G|237
*
1KC8|1|A|C|433
1KC8|1|A|U|434
1KC8|1|A|A|435
1KC8|1|A|A|436
1KC8|1|A|A|437
1KC8|1|A|C|438
1KC8|1|A|A|439
1KC8|1|A|C|440

Current chains

Chain A
23S RRNA

Nearby chains

Chain 2
RIBOSOMAL PROTEIN L37E
Chain E
RIBOSOMAL PROTEIN L4
Chain N
RIBOSOMAL PROTEIN L15E

Coloring options:

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