J6_1KD1_001
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC
- Length
- 36 nucleotides
- Bulged bases
- 1KD1|1|A|A|193, 1KD1|1|A|C|438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1KD1|1|A|G|41
1KD1|1|A|C|42
*
1KD1|1|A|G|149
1KD1|1|A|G|150
1KD1|1|A|A|151
1KD1|1|A|A|152
1KD1|1|A|C|153
*
1KD1|1|A|G|184
1KD1|1|A|G|185
1KD1|1|A|A|186
1KD1|1|A|A|187
1KD1|1|A|C|188
1KD1|1|A|A|189
1KD1|1|A|G|190
1KD1|1|A|A|191
1KD1|1|A|A|192
1KD1|1|A|A|193
1KD1|1|A|A|194
*
1KD1|1|A|U|202
1KD1|1|A|G|203
1KD1|1|A|A|204
1KD1|1|A|U|205
1KD1|1|A|G|206
*
1KD1|1|A|U|233
1KD1|1|A|A|234
1KD1|1|A|C|235
1KD1|1|A|A|236
1KD1|1|A|G|237
*
1KD1|1|A|C|433
1KD1|1|A|U|434
1KD1|1|A|A|435
1KD1|1|A|A|436
1KD1|1|A|A|437
1KD1|1|A|C|438
1KD1|1|A|A|439
1KD1|1|A|C|440
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain E
- RIBOSOMAL PROTEIN L4
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: