J6_1KQS_002
3D structure
- PDB id
- 1KQS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CG*CGCC*GUCUAGCGAACC*GAUGACAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 1KQS|1|0|U|2117, 1KQS|1|0|A|2425, 1KQS|1|0|A|2465, 1KQS|1|0|A|2467, 1KQS|1|0|A|2468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1KQS|1|0|U|2115
1KQS|1|0|U|2116
1KQS|1|0|U|2117
1KQS|1|0|A|2118
*
1KQS|1|0|U|2276
1KQS|1|0|U|2277
1KQS|1|0|U|2278
1KQS|1|0|G|2279
*
1KQS|1|0|C|2292
1KQS|1|0|G|2293
*
1KQS|1|0|C|2315
1KQS|1|0|G|2316
1KQS|1|0|C|2317
1KQS|1|0|C|2318
*
1KQS|1|0|G|2421
1KQS|1|0|U|2422
1KQS|1|0|C|2423
1KQS|1|0|U|2424
1KQS|1|0|A|2425
1KQS|1|0|G|2426
1KQS|1|0|C|2427
1KQS|1|0|G|2428
1KQS|1|0|A|2429
1KQS|1|0|A|2430
1KQS|1|0|C|2431
1KQS|1|0|C|2432
*
1KQS|1|0|G|2459
1KQS|1|0|A|2460
1KQS|1|0|U|2461
1KQS|1|0|G|2462
1KQS|1|0|A|2463
1KQS|1|0|C|2464
1KQS|1|0|A|2465
1KQS|1|0|G|2466
1KQS|1|0|A|2467
1KQS|1|0|A|2468
1KQS|1|0|A|2469
1KQS|1|0|A|2470
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L44E
- Chain A
- RIBOSOMAL PROTEIN L2
- Chain K
- RIBOSOMAL PROTEIN L15
- Chain L
- RIBOSOMAL PROTEIN L15E
- Chain P
- RIBOSOMAL PROTEIN L21E
Coloring options: